Issues

• OMP: Info #270: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.

  cgat-developers/ruffus#121 · Filter by author schultzm opened on Oct 19, 2020

• Discovery of valid parameters for OO-syntax

  cgat-developers/ruffus#117 · Filter by author FrithiofJensen opened on Feb 26, 2020

• Output CWL/WDL for a workflow

  enhancement
  cgat-developers/ruffus#112 · Filter by author AndreasHegerGenomics opened on May 23, 2019

• [architecture] Specify pipeline in task_decorator

  cgat-developers/ruffus#111 · Filter by author shouldsee opened on Mar 20, 2019
  10

• OO syntax with split using keyword arguments is broken

  bug
  cgat-developers/ruffus#91 · Filter by author jbarlow83 opened on Jun 29, 2018
  1

  

• From one task with multiple output to many tasks with single output

  cgat-developers/ruffus#77 · Filter by author felixeye opened on Aug 9, 2016

• run task function with different parameter

  cgat-developers/ruffus#76 · Filter by author Jerry-Ma opened on Aug 4, 2016

• ruffus cmdline and OO syntax

  cgat-developers/ruffus#73 · Filter by author mbiokyle29 opened on Jul 1, 2016
  1

• how to change default working dir?

  cgat-developers/ruffus#72 · Filter by author swuecho opened on May 31, 2016

• Exception handling in task.py

  cgat-developers/ruffus#71 · Filter by author kemaleren opened on May 15, 2016

• Duplicate task name error when using Spyder IDE

  cgat-developers/ruffus#70 · Filter by author msdayton opened on Apr 27, 2016
  1

• Argument parsing error messages are unhelpful

  enhancement
  cgat-developers/ruffus#66 · Filter by author bunbun opened on Mar 21, 2016
  1

  

• Formatter sometimes resolves to different (wrong) output

  cgat-developers/ruffus#58 · Filter by author jrderuiter opened on Jun 29, 2015
  4

• Support callable objects instead of functions as tasks

  cgat-developers/ruffus#57 · Filter by author jrderuiter opened on Jun 26, 2015

• Supplying extras as a dict

  cgat-developers/ruffus#55 · Filter by author jrderuiter opened on Jun 18, 2015
  3

• Zero intermediate files as soon as they are no longer necessary (posttask?)

  cgat-developers/ruffus#52 · Filter by author jrderuiter opened on Jun 1, 2015
  1

• Exclude non-pickable arguments from checkpointing

  enhancement
  cgat-developers/ruffus#50 · Filter by author ghost opened on May 9, 2015 · Version 2.6.4
  1

  

• Add testing code coverage

  cgat-developers/ruffus#47 · Filter by author bunbun opened on Mar 24, 2015

• Allow checkpoint files to be moved

  enhancement
  cgat-developers/ruffus#38 · Filter by author bunbun opened on Dec 10, 2014 · Version 2.8

• @recombine

  enhancement
  cgat-developers/ruffus#37 · Filter by author bunbun opened on Dec 10, 2014 · Version 3.0
  

• pipeline_printout_graph should print inactive tasks

  bug
  cgat-developers/ruffus#36 · Filter by author bunbun opened on Dec 10, 2014 · Version 2.7

• @retry_on_error(NUM_OF_RETRIES)

  enhancement
  cgat-developers/ruffus#33 · Filter by author bunbun opened on Dec 10, 2014

• Tag invocations of pipeline_run

  enhancement
  cgat-developers/ruffus#31 · Filter by author bunbun opened on Dec 10, 2014 · Version 2.7
  

• Let @split returns the names of output files created rather than via "globs"

  enhancement
  cgat-developers/ruffus#30 · Filter by author bunbun opened on Dec 10, 2014
  2

• Cleanup created files

  enhancement
  cgat-developers/ruffus#29 · Filter by author bunbun opened on Dec 10, 2014
  1