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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 280 87

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 67 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 233 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 220 48

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 16 10

Repositories

Showing 10 of 376 repositories
  • Training-Tech-shorts Public

    Short lessons, training various Research Software Engineering tools useful to our work.

    NBISweden/Training-Tech-shorts's past year of commit activity
    Markdown 13 18 41 0 Updated Oct 22, 2026
  • workshop-epigenomics Public

    Epigenomics Workshop • Epigenomics Data Analysis • From Bulk to Single Cell

    NBISweden/workshop-epigenomics's past year of commit activity
    Lua 3 CC-BY-SA-4.0 2 0 0 Updated Oct 22, 2026
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli's past year of commit activity
    Go 6 AGPL-3.0 1 37 (1 issue needs help) 3 Updated Oct 22, 2026
  • biovat Public

    BioVAT (BIOdiversity Variant Analysis Toolkit), a modular Nextflow pipeline for population genomics analysis of non-model organisms

    NBISweden/biovat's past year of commit activity
    Nextflow 0 MIT 0 38 (1 issue needs help) 4 Updated Oct 22, 2026
  • sda-download-ui Public

    Repository containing the UI implementation of the sda-download service

    NBISweden/sda-download-ui's past year of commit activity
    TypeScript 0 AGPL-3.0 0 6 1 Updated Oct 22, 2026
  • MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    NBISweden/MrBayes's past year of commit activity
    C 280 GPL-3.0 87 74 1 Updated Oct 22, 2026
  • SCoRe_user_doc Public

    SCoRe user documentation

    NBISweden/SCoRe_user_doc's past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Oct 22, 2026
  • workshop-python Public
    NBISweden/workshop-python's past year of commit activity
    9 CC-BY-4.0 11 2 0 Updated Oct 21, 2026
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq's past year of commit activity
    Python 7 GPL-3.0 1 0 4 Updated Oct 21, 2026
  • workshop-r Public

    Workshop • R Programming Foundations for Data Analysis • 5 days

    NBISweden/workshop-r's past year of commit activity
    CSS 9 GPL-3.0 10 0 0 Updated Oct 21, 2026
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