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@BackofenLab

Bioinformatics Lab - Department of Computer Science - University Freiburg

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  1. IntaRNA IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    C++ 60 29

  2. RNA-Playground RNA-Playground Public

    Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

    JavaScript 40 15

  3. CRISPRidentify CRISPRidentify Public

    Python 33 7

  4. GGL GGL Public

    Graph Grammar Library

    C++ 29 6

  5. CRISPRcasIdentifier CRISPRcasIdentifier Public

    Machine learning for accurate identification and classification of CRISPR-Cas systems

    Python 25 6

  6. CRISPRloci CRISPRloci Public

    Python 16 6

Repositories

Showing 10 of 85 repositories
  • IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    BackofenLab/IntaRNA's past year of commit activity
    C++ 60 29 20 9 Updated Oct 16, 2026
  • IntaRNA-benchmark Public

    Data and scripts to benchmark IntaRNA

    BackofenLab/IntaRNA-benchmark's past year of commit activity
    Python 2 MIT 3 9 2 Updated Oct 8, 2026
  • vaRRI Public

    Visual annotation of RNA-RNA interactions

    BackofenLab/vaRRI's past year of commit activity
    JavaScript 0 MIT 0 5 0 Updated Oct 7, 2026
  • BackofenLab/De-novo-design-of-antibacterial-cell-penetrating-peptides-using-structure-aware-generative-modelling's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 7, 2026
  • vaRRI-py Public

    Visualize any RNA-RNA interaction

    BackofenLab/vaRRI-py's past year of commit activity
    Python 0 Apache-2.0 0 2 0 Updated Aug 3, 2026
  • BackofenLab/CRISPRidentify's past year of commit activity
    Python 33 MIT 7 5 1 Updated Jul 27, 2026
  • V_RNA-pages Public
    BackofenLab/V_RNA-pages's past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 7, 2026
  • metabolomic_classifier Public

    provides a baseline metabolomic classifier for FI-TWIM-MS and PSI-MS datasets based on the TabPFN framework, together with baselnie methods

    BackofenLab/metabolomic_classifier's past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 10, 2026
  • Deep-Generative-modeling-Reveals-Multi-Phase-Regenerative-Cell-Dynamics-in-Arabidopsis-Roots Public

    Plant regeneration is a highly orchestrated process characterised by dynamic cellular reprogramming and lineage plasticity. This study presents an integrative deep generative framework to identify and characterise regenerative cell states from scRNA-seq data collected across five post-injury time points

    BackofenLab/Deep-Generative-modeling-Reveals-Multi-Phase-Regenerative-Cell-Dynamics-in-Arabidopsis-Roots's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 15, 2026
  • BackofenLab/SV_diagnostic_tool's past year of commit activity
    Python 1 0 0 0 Updated Feb 19, 2026